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Fundamentals of Biological Sciences

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(1)

Fundamentals of Biological Sciences

Lecture6

Dr. Açelya Yılmazer

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DNA Replication Occurs at Sites Called Replication Factories

Figure 07.08: DNA replication factories appear as bright spots

of fluorescently tagged, newly synthesized DNA. Reproduced with permission from J. Cell Sci., vol. 107 (8): 2191–2202.

[http://jcs.biologists.org/cgi/content/abstract/107/8/219 1].

Photos courtesy of Peter R. Cook, University of Oxford.

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RNA Polymerase Complexes and Spliceosomes Are Distinct Structures

within the Nucleus

• RNA polymerase complexes are responsible for transcribing the DNA sequence in genes into:

– mRNA – rRNA – tRNA

– other RNAs

• Spliceosomes are responsible for splicing the newly synthesized RNAs into their mature form

(4)

DNA Polymerases

Figure 07.10: DNA is synthesized in the 5 -to-3 direction to permit DNA polymerase to proofread the

new strand.

• DNA polymerases add deoxyribonucleotides to the 3′ end of DNA strand

• DNA polymerases proofread their work

(5)

DNA Replication Is Semi-discontinuous

• DNA replication begins at

sites on chromosomes called origins of replication

• During replication, specialized proteins unwind and separate the two strands to form a

replication fork

(6)

DNA Replication Is Semi-discontinuous

• DNA replication begins at sites on chromosomes

called origins of replication

• During replication,

specialized proteins unwind and separate the two

strands to form a replication fork

(7)

DNA Replication Is Semi-discontinuous

Figure 07.14: The helicase creating the replication fork is connected to two DNA polymerase catalytic subunits, each of which is held onto DNA by a sliding

clamp.

(8)

• DNA replication requires an RNA primer

– leading/lagging strand

– Okazaki fragments

• DNA ligases join fragments of single- stranded DNA

Figure 07.15: Fusion of replication bubbles.

DNA Replication Is Semi-discontinuous

(9)

Replication of DNA at the End of Chromosomes Requires Additional Steps

Figure 07.16: Four features of telomerase.

(10)

Cells Have Two Main DNA Repair Mechanisms

• Excision repair systems

– Mismatch repair – Recombination

repair

Figure 07.17: Excision repair replaces a damaged strand.

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• Key Concepts:

– The function of mitosis is to safely separate

replicated chromosomes into two daughter cells

– Mitosis is divided into five phases, based largely on morphological changes in the location and

arrangement of chromosomes

– The microtubule cytoskeleton, including microtubule motor proteins, is essential for proper segregation of chromosomes

– The actin cytoskeleton is required for the actual

division of one cell into two daughter cells following mitosis

Mitosis Separates Replicated

Chromosomes

(12)

Mitosis Is Divided into Stages

• 1879—Walther Flemming described the motion of what he saw under the microscope as “threads”

(Greek, mitos) moving in an actively dividing cell

Figure 07.18: The events of mitosis. Photos © Conly L.

Rieder, Wadsworth Center. Illustrations from W. Flemming, Archiv für Mikroskopische Anatomie. Berlin: J. Springer (1871).

(13)

Motors Contribute to the Formation of the Mature Spindle in Prophase

• Dynein motor proteins

• Kinesin-related motor proteins

Figure 07.20: Microtubule motors help form the

mitotic spindle.

(14)

Arrival of the Chromosomes at the Spindle Equator Signals

the Beginning of Metaphase

• Metaphase plate = spindle equator

• Chromosome recombination takes place during metaphase

(15)

Anaphase: The Separation of Chromosomes

• Anaphase Promoting Complex (APC)

– Tags securin with ubiquitin, leading to its degradation

– Loss of securin frees separase, an enzyme that

helps break chromatids apart by digesting cohesin

(16)

Separation of Chromatids at the Metaphase Plate Occurs During Anaphase

• The onset of

anaphase requires dissolving the

connections between sister chromatids

– APC

• Anaphase is

subdivided into two phases:

– anaphase A – anaphase B

Figure 07.25: As the chromosomes move to the poles (anaphase A), the poles themselves move farther

apart (anaphase B), increasing the separation between them.

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