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Journal of Obstetrics and Gynaecology
ISSN: 0144-3615 (Print) 1364-6893 (Online) Journal homepage: https://www.tandfonline.com/loi/ijog20
The relationship between KRAS LCS6
polymorphism and endometrium cancer
Feyza Nur İncesu Çintesun, Özlem Seçilmiş Kerimoğlu, Ersin Çintesun,
Süleyman Nergiz, Hasan Acar & Çetin Çelik
To cite this article: Feyza Nur İncesu Çintesun, Özlem Seçilmiş Kerimoğlu, Ersin Çintesun, Süleyman Nergiz, Hasan Acar & Çetin Çelik (2020) The relationship between KRAS LCS6 polymorphism and endometrium cancer, Journal of Obstetrics and Gynaecology, 40:7, 988-993, DOI: 10.1080/01443615.2019.1678576
To link to this article: https://doi.org/10.1080/01443615.2019.1678576
Published online: 02 Dec 2019.
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ORIGINAL ARTICLE
The relationship between KRAS LCS6 polymorphism and endometrium cancer
Feyza Nur _Incesu C¸intesuna, €Ozlem Sec¸ilmis¸ Kerimoglub, Ersin C¸intesunb, S€uleyman Nergizc, Hasan Acarc and C¸etin C¸elikba
Department of Obstetrics and Gynecology, University of Health Sciences Konya Training and Research Hospital, Konya, Turkey;
b
Department of Obstetrics and Gynecology, Selc¸uk University Medicine Faculty, Konya, Turkey;cDepartment of Genetics, Selc¸uk University Medicine Faculty, Konya, Turkey
ABSTRACT
The aim of this study was to investigate the relationship betweenKRAS LCS6 mutation and endometrial cancer (EC). The study included 105 patients who had hysterectomy for benign reasons and 99 EC patients. The patients with Type 1 EC were classified according to histological properties, cancer stage, grade, tumour dimension, myometrial invasion (MMI), lymphovascular invasion (LVI), cytology, and number of positive lymph nodes.KRAS LCS6 mutation was examined in blood samples taken from all patients in both groups. No statistically significant difference was determined between the EC patients and the control group in demographic features. Weight and the Body Mass Index (BMI) values were higher in EC group (p < .001). While the incidence of this polymorphism is 5.8% throughout the world, the polymorphism rate was found to be 16.2% in the EC group and 12.4% in the control group, with no statistically significant difference determined (p > .05). Despite the higher rate of LCS6 polymorph-ism incidence in EC patients in this study conducted on a relatively large sample, there was not found to be a statistically significant difference in comparison with the control group. In addition, the pres-ence of LCS6 polymorphism was not determined to have an effect on EC histopathological characteristics.
IMPACT STATEMENT
What is already known on this subject? Endometrial cancer (EC) is a genital system cancer which is one of the most widespread gynecological cancers seen in the USA and other developed coun-tries, In EC, the most frequently seen gene mutations are PTEN tumour suppressor gene, KRAS,b1 catenin, BCL-2, CTNNB and P53 mutations. KRAS LCS6(let-7 miRNA binding region polymorphism) polymorphism has a worldwide incidence of 5.8% (Chin et al. 2008).There are studies shown that KRAS LCS6 polymorphism has an effect on developing EC (Lee et al. 2014), ovarian cancer(Ratner et al.2010)and endometriosis in women (Grechukhina et al.2012).
What do the results of this study add? In our study, LCS6 located on KRAS 3’-UTR was found at the rate of 16.2% in Type 1 EC patients. This increase is noticeable when it is considered that the incidence of this polymorphism is 5.8% in the general population. The results of the current study supports the preliminary findings of Lee et al.
What are the implications of these findings for clinical practice and/or further research? These new genetic markers could help to develop gene-targeted therapies, identify genetic basis of the disease and the factors that could affect the EC prognosis.
KEYWORDS
Genetic; mutation; KRAS LCS6; endometrium cancer
Introduction
Endometrial cancer (EC) is a genital tract cancer that is often seen in postmenopausal women. It is one of the most wide-spread gynaecological cancers seen in the USA and other developed countries, with >60,000 new cases per year and >10,000 EC-related deaths reported in the USA (Siegel et al. 2016). The annual mortality rate is 1.7–2.4% (Siegel et al. 2016). After breast, colon and lung cancers, it is the most commonly encountered cancer in females, and the 7th most common cause of cancer-related deaths (Mutter2000).
EC risk factors include advanced age, nulliparity, tamoxifen treatment, early menarche, late menopause, polycystic ovary syndrome, obesity, diabetes, oestrogen-secreting tumours,
Lynch syndrome, and familial female genital tract cancers, breast and colon cancers (Pellerin and Finan2005; Iqbal et al. 2012; Renaud et al. 2013). The role of oestrogen in the aeti-ology of EC has been definitively shown and all the factors that increase exposure to an imbalance of oestrogen and progesterone increase the risk.
Vaginal bleeding is an early symptom of premalignant lesions of EC, and with the widespread use of ultrasound and endometrial sampling, the diagnosis of EC can be easily made under polyclinic conditions.
Generally, there are two sub-types of EC; Type 1 is an oes-trogen -dependent adenocarcinoma which is seen more fre-quently, while Type 2 is known as non-endometrioid
CONTACTFeyza Nur _Incesu C¸intesun feyzanurincesu@gmail.com Department of Obstetrics and Gynecology, University of Health Sciences Konya Training and Research Hospital, Konya, Turkey
ß 2019 Informa UK Limited, trading as Taylor & Francis Group
2020, VOL. 40, NO. 7, 988–993
adenocarcinoma and shows oestrogen independent autono-mous development. It is seen in thin, elderly, postmeno-pausal women who do not have the capacity to produce oestrogen and develops on the basis of atrophic endomet-rium. Many genetic studies have been conducted in investi-gations about aetiological causes of both Type 1 and Type 2
endometrium cancers (Berchuck and Boyd 1995; Inoue 2001;
Tsugawa et al.2002). In Type 1 EC, the most frequently seen
gene mutations are PTEN tumour suppressor gene, KRAS, b1
catenin, BCL-2 and CTNNB, whereas in Type 2 EC, P53 muta-tion is the most commonly seen genetic abnormality (Berchuck and Boyd1995; Dobrzycka et al.2012).
KRAS is encoded in the short arm of proto-oncogene 12th chromosome, and is a protein which functions in normal cell proliferation signal transmission. KRAS which has undergone mutation becomes a potent oncogene. Single gene poly-morphism has been determined in the LCS6 section which controls the down-regulation ofKRAS gene (Chin et al. 2008). In a study which examined the relationship between
endo-metriosis and KRAS LCS6 polymorphism, there was
deter-mined to be increased KRAS mRNA and protein expression,
and increased proliferation and invasion of endometrial
stro-mal cells in women with KRAS LCS6 polymorphism positivity
(Grechukhina et al.2012).
The aim of the this study was to investigate the
relation-ship between LCS6 polymorphism in the KRAS gene in
patients with Type 1 EC and the additional histopathological characteristics of the effect increasing invasion.
Material and method Patient selection
This prospective study included a total of 204 patients, 99 Type 1 EC patients who underwent hysterectomy for EC after confirmed histopathological diagnosis and 105 patients who underwent hysterectomy for benign gynecological com-plaints and reported a benign diagnosis from endometrial sampling (proliferative endometrium, secretory endometrium, endometritis etc). The study was conducted at our clinic between January 2012 and January 2014. Approval for the study was granted by the Local Ethics Committee and informed consent was obtained from all the patients included in the study.
The age, parity, height and weight values of all the patients were recorded. For the EC patients, a record was also made of tumour stage, histological grade, lymphovascu-lar invasion (LVI), the number of positive pelvic and
para-aor-tic lymph nodes collected during surgery, myometrial
invasion (MMI) and cytology results. The EC patient group included those with endometrioid histological type (Type 1). The patients were classified as stage 1, 2, or 3 according to the 2009 FIGO surgical staging criteria.
Patients were excluded if they had endometrial hyperpla-sia, a diagnosis of any organ cancer other than EC, or if they did not wish to participate in the study. The genetic studies of the patients in this study were conducted in the Molecular
Genetic Laboratory of the Selcuk University Medical
Genetic Department.
DNA isolation
From the blood samples obtained, DNA isolation was made under sterile conditions using a DNA isolation kit (Vivantis, Malaysia) with the spin column method as follows. Lysis buf-fer (200mL) was placed in a 1.5 mL sterile, empty Eppendorf tube, then 200mL pellet was added. A further 20 mL protein-ase-K was added to the pellet and lysis buffer mixture and was mixed. This mixture was incubated on a hot plate at 56C for 10 mins, after which the mixture was vortexed. At
the end of the incubation, 200mL 100% ethyl alcohol was
added to the mixture, was pipetted and transferred to the spin column. By transferring to a new Eppendorf tube each
time and adding 500mL washing solution, the spin column
washing procedure was made at 500 g at 1-min intervals. 200mL distilled water previously heated to 56C in the incu-bator was added to the spin column and the mixture was centrifuged at 5000 g for 1 min and the DNA held in the spin column filter was extracted. The DNA obtained was stored at 20C until PCR analysis.
Polymerase chain reaction (PCR)
The T> G base change is located in the 4th position of the 30UTR (untranslated region) of theKRAS gene. Analysis of this polymorphism was made by examining the change in length of the fragment products obtained using the PCR-restriction enzyme fragment method (PCR-RFLP, PCR-restriction frag-ment length polymorphism). While enzyme fragfrag-mentation occurs if thymine nucleotide is found in the gene region, fragmentation does not occur in the presence of guanine
nucleotide. Using Reverse: 50-AGTACCTAGGATTAT-30 and
Forward: 50-CGTGTGCACTCACTA -3’primers for this, the
region which could be polymorphic was proliferated. The pri-mers were designed by the Medical Genetic Department of our university. The method which was used for the reaction
was the same method as Grechukhina et al used
(Grechukhina et al.2012).
Agarose gel electrophoresis
Agarose of 2 g was weighed and placed in a 250 mL Erlenmayer flask and 100 mL 1X TAE (Tris, Acetic acid and EDTA) buffer was added. This was placed in a microwave oven for 2 min until the agar melted and boiled. The melted agar solution was kept at room temperature and cooled to
approximately 75C, then 100mL was added from 0.5 mg/mL
ethidium bromide. The prepared agarose gel was poured into the electrophoresis cup, which had been previously placed with an approximately 1 mm gap on the grooved
base, and was kept at room temperature for 20–30 min to
freeze. Holding the grooves from both ends, the gel cup was carefully removed and placed in the electrophoresis tank. Appropriate DNA markers and PCR products as a total of
12mL (10 lL PCR productþ 2 lL 6X loading dye buffer) were
transferred to the wells which emerged in the gel.
Electrophoresis was applied at 125 V (12.5 V/cm2) for
20–30 min. By comparing the resulting bands with markers in
the UV illuminator (image analysis system), the DNA walking distance was determined (Figure 1).
Restriction enzyme fragment studies
The Restriction Fragment Length Polymorphism (RFLP)
method is a method which allows the examination of DNA profiles formed by separation in the agarose gel electrophor-esis system of DNA segments and fragmentation with a restriction endonuclease enzyme specific to genomic DNA. By identifying specific sequences in the DNA of these enzymes, which are found in bacteria, the fragmentation process occurs in the identified region or in another specific sequence outside this region. Genotyping of single nucleo-tide polymorphisms occurs in two steps with this method. The first step is based on PCR product sequencing or enzyme fragmentation after gel electrophoresis for the genotyping of the polymorphic region by hundreds of thousands of prolifer-ations with PCR of approximately 200 base pairs around the single nucleotide polymorphism (SNP) in the DNA region (Linn and Arber1968).
In the RFLP method, after fragmentation of the sample DNA with one or more restriction endonuclease enzymes, the molecular weight of the DNA fragments obtained can be determined by molecular weight standard (marker) using gel electrophoresis. After treatment with ethidium bromide, the gel renders the fragments into a form which can be seen under UV light, and genotyping can be made by examining the number and size of bands in the gel profile, and the fre-quency of genotype/allele of the locus can be determined.
In the current study, genotype analysis was made by
Hinf1 enzyme in 1.5mL for 50 mL reaction with RFLP method
of the LCS6 (let-7 complementary sites) polymorphic regions in the 3’UTR of the KRAS gene.
The mixture was left in a water bath at 65C for 5–10 min. At the end of this period, after treatment of the obtained enzyme fragmentaation products in gel, evaluation was made using a UV illuminator and photographs were taken (Figure 2).
Statistical analysis of the data
All statistical analyses were performed using SPSS 20 statis-tical software package (SPSS Inc., Chicago, IL). The categorical data was compared using Chi-square analysis, the Mann
Whitney U-test was used for the comparisons of two groups
of numerical data and in the comparisons of three or more groups, the Kruskal WallisH-test was used. A value of p < .05 was accepted as statistically significant.
Results
The demographic data of the patients with EC subtypes and
the control group are shown inTable 1. The mean age was
56.9 ± 8.1 years in the Type 1 EC patients, 58.3 ± 7.7 years in the control group. No statistically significant difference was determined between the two groups in respect of mean age (p ¼ .156). No statistically significant difference was found between the groups in respect of height and parity. The weight and BMI values were determined to be statistically significantly higher in the Type 1 EC group than in the con-trol group (p < .005).
The correlations between KRAS LCS6 polymorphism and
type 1 EC patients are presented in Table 2. Comparisons
were made between 105 patients in the control group and 99 patients in the EC group. The polymorphism rate was found to be 16.2% in the Type 1 EC group and 12.4% in the control group, with no statistically significant difference determined (p > .05).
The pathological characteristics of the Type 1 EC patients are shown in Table 3. A total of 99 EC patients were
eval-uated in respect of KRAS LCS6 polymorphism. No difference
was found between KRAS LSC6 variant and heterozygote/
homozygote patients in respect of stage, grade, MMI, LVI and cytology (p > .05). Although there was no istatistically signifi-cant difference, the MMI rate was observed to be higher in the wild type patient group than in theKRAS variant patient group (86.7% vs. 68.8%). The presence of LVI was determined
to be lower in wild type patients than in the KRAS variant
patients (9.6% vs. 18.8%). The number of positive para-aortic
and pelvic lymph nodes were found to be similar in the wild type and variant patient groups.
Discussion
EC is the most common gynaecologic malignancy in devel-oped countries and the second most common in developing countries after cervical cancer (Siegel et al.,2016). All women with apparently resectable EC should undergo surgical ther-apy. In especially type 1 EC patients with less than 50%
myo-metrial invasion, histologic grade 1 or 2 and no
lymphovascular space invasion, a hysterectomy with bilateral adnexectomy, but without lymphadenectomy is sufficient (Burke et al. 2014, Mariani et al. 2000b). For patients with a biopsy-proven diagnosis of grade 1 endometrial cancer who wish to preserve future fertility may be candidates for conser-vative treatment using progestin therapy (Jozwik et al.2015). The recommended therapy of type 2 EC cancers or Type 1 EC patients with a myometrial invasion of more than 50% or grade 3 EC patients or tumour dimension is greater than 2 cm is a hysterectomy with bilateral adnexectomy with a pelvic and paraaortic lymphadenectomy (Mariani et al. 2008, 2000a). Radiotherapy is often recommended for patients greater than stage 1 (Nout et al.2010).
Let-7 miRNA is an RNA molecule which functions in the
down-regulation of KRAS gene expression. Normal LCS6 Let
-7 binding occurs together with an increase in loss of KRAS transcription and translation of the region. The regulating effects of RAS proteins are important in the tyrosine kinase mitogenic and oncogenic effect. RAS activation increases cell life and proliferation (Khosravi-Far and Der 1994; Schubbert et al.2007).
Figure 2. Image of the PCR gel electrophoresis for the LCS6 polymorphism T> G change in the 3’ UTR of the KRAS gene.
Table 1. The demographic data of the patients with Type 1 EC and the con-trol group.
Type 1 EC Group Control Group p Age (years) 57 (42–77) 59 (41–79) .156 Height (cm) 158 (141–169) 159 (144–170) .369 Weight (kg) 72 (50–127) 65 (45–81) <.001 Parity 2 (0–9) 2 (0–8) .263 BMI (kg/m2) 30 (20–50) 26.5 (18–32.4) <.001
Values are stated as median (minimum–maximum). EC: Endometrial cancer; BMI: Body mass index. Obtained from Mann-Whitney U Test.
Table 2. The relationship of KRAS LCS6 polymorphism with EC histo-logical type. Wildtype n (%) Homozygote þ Heterozygote mutationn1þn2 ¼ n (%) p Endometrioid Adenocarcinoma (Type 1) 83 (83.8) 5þ 11 ¼ 16 (16.2) .440 Control group 92 (87.6) 2þ 11 ¼ 13 (12.4)
Values are stated as number and percentage (%). Obtained from Pearson’s Chi-square analysis.
In a 2008 study by Chin et al, the frequency of LCS6 poly-morphism allele was investigated in 2433 healthy individuals in 46 different populations, and variant G allele was deter-mined in the LCS6 polymorphism region at the rate of 5.8%. This polymorphism in East Asian and Native American Indian populations is so low as to be negligible, it is extremely rare in African populations, and has been determined at the rate of 7% in European populations (Chin et al.2008).
In a study published by Grechukhina et al. in 2012, the relationship was investigated between endometriosis and the let-7 miRNA binding region (LCS6) polymorphism located on KRAS 3’-UTR, and the presence of this variant allele in cell cul-ture was shown to increase the proliferation and invasion rates in endometrial cells. This polymorphism was found at a higher rate (31%) in patients diagnosed with endometriosis compared to the control group. These findings were one of the sources of inspiration for the current study. In another
study that examined the relationship ofKRAS LCS6 SNP with
endometriosis, no significant difference was found between the endometriosis patient group and the control group (Farahani et al.2015).
The relationship between the presence of KRAS variant
and non-gynaecological cancers was investigated in an American population and the variant was determined at a higher rate in patients with non-small-cell lung cancer com-pared to the control group (18–20% vs. 12–14%). It has been accepted as a genetic marker of poor prognosis in head and neck cancers. (Christensen et al.2009). It is noticeable that in these studies, nearly all the KRAS variants were heterozygote in both patient and healthy control tissues (Chin et al.2008).
In the current study, 77% of the KRAS variants were
deter-mined to be heterozygote. Just as this may be related to the studies having been conducted on different cancer groups, it could also be attributed to the study data being formed from different ethnic groups.
In a 2010 study by Ratner et al, the frequency ofKRAS variant allele was determined as 25% in ovarian cancer cases, and it was concluded that theKRAS variant allele was a factor increasing the risk of the development of ovarian cancer (Ratner et al.2010).
In a study which investigated the frequency of LCS6 morphism and the clinical effect in EC patients, LCS6 poly-morphism was determined in 16.7% of Type 1 EC patients, in 24.3% of Type 2 EC patients and in 13.9% of the control cases (p ¼ .19) (Lee et al. 2014). According to these results, it was stated that LCS6 polymorphism did not generally increase the risk of EC, but could be a genetic marker for Type 2 EC risk. In this study, tumour specimen expression profiles were examined of 46 Type 1 EC patients and miRNA and DNA were isolated from genotypes, and the relationships were examined between the miRNA expression levels and
the patient characteristics of KRAS variant genotype, the
histopathological characteristics and survival rates. The rela-tionship between LCS6 polymorphism and age, disease grade, histology, MI depth and LVI was examined, and it was stated that these parameters did not change with the pres-ence of variant allele or non-variant allele. The 3-year survival rate was reported as 100% in patients with KRAS variant and 77% in patients with non-variant allele (HR0.3, p ¼ .24), but no statistically significant difference was determined. The authors attributed this to the low number of patients and the short follow-up period. As it was considered that just as KRAS variant could change gene expression, the miRNA expression might also be changed, the miRNA expression lev-els in tumour tissues were examined, and it was shown that miRNA expression changed with age, LVSI and the presence ofKRAS variant (Lee et al.2014).
In the current study, let-7 miRNA binding region
poly-morphism (LCS6) located on KRAS 3’-UTR was found at the
rate of 16.2% in Type 1 EC patients. Despite the frequency of the variant allele determined in the EC patients, that this was
Table 3. Pathological characteristics of the EC patients. Endometrioid adenocarcinoma Wild type (Normal) TT HomozygoteKRAS LCS6 PolymorphismGG and TG HeterozygoteKRAS LCS6 PolymorphismGG and TG p1 p2 STAGE 1A,1B,2 74 (86.0%) 4 (4.7%) 8 (9.3%) .284 .216 3A,3B,3C 9 (69.2%) 1 (7.7%) 3 (23.1%) GRADE 1,2 76 (83.5%) 5 (5.5%) 10 (11.0%) .791 >.99 3 7 (87.5%) 0 1 (12.5%) MMI 50% 72 (86.7%) 4 (4.8%) 7 (8.4%) .143 .129 50% 11 (68.8%) 1 (6.3%) 4 (25.0%) LVI Absent 75 (85.2%) 5 (5.7%) 8 (9.1%) .156 .378 Present 8 (72.7%) 0 3 (27.3%) Cytology Negative 81 (8.35%) 5 (5.2%) 11 (11.3%) .821 >.99 Positive 2 (100%) 0 0
Positive Pelvic Lymph Nodes 0 (0–11) 0 (0–3) 0 (0–3) .822 .903 Positive Para-Aortic Lymph Nodes 0 (0–15) 0 0 .488 .231 Values are stated as number and percentage (%) and median (minimum–maximum).
MMI: myometrial invasion. LVI: lymphovascular invasion. p1: value between three groups.
p2
: value between normal and homoþ hetero groups.
not statistically significant when compared to the rate of 13% determined in the control group can probably be attrib-uted to the small sample. When it is considered that the inci-dence of this polymorphism is 5.8% throughout the world in general, the elevation of the polymorphism rates determined in the EC patients is noticeable (Chin et al.2008). When the distribution of the histopathological variables is examined, the results of the current study are similar to the findings of Lee et al. with no statistically significant difference deter-mined between the patients carrying the variant and non-variant allele.
Limitations of the current study can be said to be the lim-ited number of patients, that no examination could be made of Type 2 EC patients as a separate group because of the low incidence and that miRNA expression could not be eval-uated because of technical insufficiencies.
In conclusion, although no significant difference was determined in the frequency of LCS6 polymorphism between the EC patients and the control group, it was noticeably that the result is high compared to previous studies with exten-sive case series. Moreover, the presence of LCS6
polymorph-ism was not determined to have an effect on the
histopathological characteristics of EC. Further studies exam-ining the effect of LCS6 polymorphism on EC with a greater number of patients will be of great importance in identifying the genetic basis of the disease, factors that could affect the EC prognosis, individuals at risk of the disease and in deter-mining personalised treatment targets.
Disclosure statement
The authors declare that they have no conflict of interest
Funding
This study was supported by Selcuk University Scientific Projects fund.
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